PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG516100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 284aa    MW: 31089.6 Da    PI: 4.7968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG516100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.7e-102072471055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+A +Y+k Lq
  Pavir.2KG516100.1.p 207 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 247
                          9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.761197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-14198263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-12202259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.95E-12206251No hitNo description
PfamPF000105.3E-7207247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEADMMAQFL GADYHSFTYE HVDESMEALV ALFLPSLEND SNSSAICLNY DVPPLCWPQP  60
AHSSSVTSLL DPAQNFESFE FPVTNPLPPA DFNSPSDVPY FSDDLSPLHG NHSSSIEEEA  120
ANDAPATKKR KSNATIKMQA SKKTKKAGKK DSVSNEDGTN AYVNAQSSSS CTSEEANLEG  180
NMNSSSKKTG TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAA  240
QYVKFLQLQI KLLSSDDMWM YAPIAYNGIN ISSVDLNISS LQK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463111.11e-143hypothetical protein SORBIDRAFT_02g037990
SwissprotQ84WK08e-51BH085_ARATH; Transcription factor bHLH85
TrEMBLK4A0Q51e-176K4A0Q5_SETIT; Uncharacterized protein
STRINGSi032445m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-39bHLH family protein